SNP Profiles of GU 171/C View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AG	GG	CC	TT	CC	TT	TT	CC	CC	AA	GG	CC	AA
1._RUQ_195	_	_	GG	_	_	_	_	TT	_	CC	_	GG	_	AA
2._RUQ_195	_	AA	GG	CC	_	_	_	TT	_	_	_	_	CC	AA
3._GU_171_/C	CC	AA	GG	CC	TT	_	TT	TT	CC	CC	AA	GG	CC	AA
4._GC-01-094-5-11	CC	AA	GG	CC	TT	_	TT	TT	CC	CC	AA	GG	CC	AA
5._GC-01-094-5-11	CC	AA	GG	CC	TT	_	TT	TT	CC	CC	AA	GG	CC	AA
6._GC-01-094-5-11	CC	AA	GG	CC	TT	_	TT	TT	CC	CC	AA	GG	CC	AA
7._GC-01-094-5-11	CC	AA	GG	CC	TT	_	TT	TT	CC	CC	AA	GG	CC	AA
8._GC-01-094-5-11	CC	AA	GG	CC	TT	_	TT	TT	CC	CC	AA	GG	CC	AA
9._GC-01-094-5-11	CC	AA	GG	CC	TT	_	TT	TT	CC	CC	AA	GG	CC	AA
10._GC-01-094-5-11	CC	AA	GG	CC	TT	_	TT	TT	CC	CC	AA	GG	CC	AA
11._GU_171_/C	CC	AA	GG	CC	TT	_	TT	TT	CC	CC	AA	GG	CC	AA
12._GU_171_/C	CC	AA	GG	CC	TT	_	TT	TT	CC	CC	AA	GG	CC	AA
13._GU_171_/C	CC	AA	GG	CC	TT	_	TT	TT	CC	CC	AA	GG	CC	AA
14._GU_171_/C	CC	AA	GG	CC	TT	_	TT	TT	CC	CC	AA	GG	CC	AA
15._GU_171_/C	CC	AA	GG	CC	TT	_	TT	TT	CC	CC	AA	GG	CC	AA
16._GU_171_/C	CC	AA	GG	CC	TT	_	TT	TT	CC	CC	AA	GG	CC	AA
17._GC-01-94-5-11	GG	AA	CC	GG	AA	CC	AA	AA	_	_	AA	GG	GG	AA
18._RUQ_195	GG	AA	CC	GG	AA	CC	AA	AA	_	_	AA	GG	GG	AA
19._GC-01-94-5-11	GG	AA	CC	GG	AA	_	AA	AA	_	_	AA	GG	GG	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	GG	CC	AA
1._RUQ_195	_	_	_	_	_	GG	GG	AA	_	CC	CC	_	_	_
2._RUQ_195	_	_	_	_	CC	GG	GG	_	CC	CC	CC	GG	CC	AA
3._GU_171_/C	TT	AA	GG	CC	CC	GG	GG	GG	CC	CC	CC	GG	CC	AA
4._GC-01-094-5-11	TT	AA	GG	CC	CC	GG	GG	GG	CC	CC	CC	GG	CC	AA
5._GC-01-094-5-11	TT	AA	GG	CC	CC	GG	GG	GG	CC	CC	CC	GG	CC	AA
6._GC-01-094-5-11	TT	AA	GG	CC	CC	GG	GG	GG	CC	CC	CC	GG	CC	AA
7._GC-01-094-5-11	TT	AA	GG	CC	CC	GG	GG	GG	CC	CC	CC	GG	CC	AA
8._GC-01-094-5-11	TT	AA	GG	CC	CC	GG	GG	GG	CC	CC	CC	GG	CC	AA
9._GC-01-094-5-11	TT	AA	GG	CC	CC	GG	GG	GG	CC	CC	CC	GG	CC	AA
10._GC-01-094-5-11	TT	AA	GG	CC	CC	GG	GG	GG	CC	CC	CC	GG	CC	AA
11._GU_171_/C	TT	AA	GG	CC	CC	GG	GG	GG	CC	CC	CC	GG	CC	AA
12._GU_171_/C	TT	AA	GG	CC	CC	GG	GG	GG	CC	CC	CC	GG	CC	AA
13._GU_171_/C	TT	AA	GG	CC	CC	GG	GG	GG	CC	CC	CC	GG	CC	AA
14._GU_171_/C	TT	AA	GG	CC	CC	GG	GG	GG	CC	CC	CC	GG	CC	AA
15._GU_171_/C	TT	AA	GG	CC	CC	GG	GG	GG	CC	CC	CC	GG	CC	AA
16._GU_171_/C	TT	AA	GG	CC	CC	GG	GG	GG	CC	CC	CC	GG	CC	AA
17._GC-01-94-5-11	AA	AA	GG	GG	GG	CC	CC	_	GG	CC	CC	CC	_	AA
18._RUQ_195	AA	AA	GG	GG	GG	CC	CC	_	GG	CC	CC	CC	_	AA
19._GC-01-94-5-11	AA	AA	GG	GG	GG	CC	CC	_	GG	CC	CC	CC	_	AA

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AG	AG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X
1._RUQ_195	_	_	_	_	GG	_	_	_	_	AA	_	_	X_X	X_X
2._RUQ_195	AG	_	AA	CC	GG	CC	AA	TT	TT	AA	_	_	X_X	X_X
3._GU_171_/C	AG	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X
4._GC-01-094-5-11	AG	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X
5._GC-01-094-5-11	AG	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X
6._GC-01-094-5-11	AG	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X
7._GC-01-094-5-11	AG	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X
8._GC-01-094-5-11	AG	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X
9._GC-01-094-5-11	AG	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X
10._GC-01-094-5-11	AG	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X
11._GU_171_/C	AG	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X
12._GU_171_/C	AG	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X
13._GU_171_/C	AG	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X
14._GU_171_/C	AG	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X
15._GU_171_/C	AG	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X
16._GU_171_/C	AG	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X
17._GC-01-94-5-11	_	GG	AA	GG	GG	GG	AA	AA	AA	AA	TT	GG	X_X	X_X
18._RUQ_195	_	GG	AA	GG	GG	GG	AA	AA	AA	AA	TT	GG	X_X	X_X
19._GC-01-94-5-11	_	GG	AA	GG	GG	GG	AA	AA	AA	AA	TT	GG	X_X	X_X

Input profile: GU_171_/C RUQ_195

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

1._GU_171_/C RUQ_195

identical
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

2._GU_171_/C RUQ_195

97.9 %
24 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

3._GU_171_/C

94.9 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1511 2 > FP

Dapeng Zhang, 2016

4._GU_171_/C GC-01-094-5-11

94.9 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14

5._GU_171_/C GC-01-094-5-11

94.9 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

6._GU_171_/C GC-01-094-5-11

94.9 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10 > FP2

7._GU_171_/C GC-01-094-5-11

94.9 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

8._GU_171_/C GC-01-094-5-11

94.9 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

9._GU_171_/C GC-01-094-5-11

94.9 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP3

10._GU_171_/C GC-01-094-5-11

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

11._GU_171_/C

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1511 7

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

12._GU_171_/C

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1511 9

Dapeng Zhang, 2016

13._GU_171_/C

94.9 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1511 12

Dapeng Zhang, 2016

14._GU_171_/C

94.9 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1511 14

Dapeng Zhang, 2016

15._GU_171_/C

94.9 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1511 1 > FP

Dapeng Zhang, 2016

16._GU_171_/C

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1511 10 > F

Dapeng Zhang, 2016

17._GU_171_/C GC-01-94-5-11

45.7 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 5, Rep: 11, Tree: 1 > FP1

Notes: Brazil_Selections_Poss_grandparent

18._GU_171_/C RUQ_195

45.7 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

19._GU_171_/C GC-01-94-5-11

44.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 5, Rep: 11, Tree: 7

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25